C. Amoros, G. Bornette, and C. Henry, ENVIRONMENTAL AUDITING: A Vegetation-Based Method for Ecological Diagnosis of Riverine Wetlands, Environmental Management, vol.25, issue.2, pp.211-227, 2000.
DOI : 10.1007/s002679910017

URL : https://hal.archives-ouvertes.fr/hal-00182528

G. Bornette and C. Amoros, Aquatic vegetation and hydrology of a braided river floodplain, Journal of Vegetation Science, vol.87, issue.2, pp.497-512, 1991.
DOI : 10.2307/3236032

G. Bornette and M. Arens, Charophyte communities in cut-off river channels, Aquatic Botany, vol.73, issue.2, pp.149-162, 2002.
DOI : 10.1016/S0304-3770(02)00017-7

URL : https://hal.archives-ouvertes.fr/halsde-00152145

G. Bornette and A. Large, Groundwater-surface water ecotones at the upstream part of confluences in former river channels, Hydrobiologia, vol.2, issue.2, pp.123-137, 1995.
DOI : 10.1007/BF00015531

G. Bornette and S. Puijalon, Macrophytes: Ecology of Aquatic Plants, In: Encyclopedia of Life Sciences. Wiley J & Sons, vol.3, issue.409, pp.1-9, 2009.
DOI : 10.1002/9780470015902.a0020475

URL : https://hal.archives-ouvertes.fr/halsde-00424428

G. Bornette and S. Puijalon, Response of aquatic plants to abiotic factors: a review, Aquatic Sciences, vol.12, issue.343, pp.1-14, 2011.
DOI : 10.1007/s00027-010-0162-7

URL : https://hal.archives-ouvertes.fr/halsde-00561575

G. Bornette, C. Amoros, and G. Collilieux, Role of seepage supply in aquatic vegetation dynamics in former river channels: Prediction testing using a hydroelectric construction, Environmental Management, vol.83, issue.2, pp.223-234, 1994.
DOI : 10.1007/BF02393763

G. Bornette, C. Amoros, and N. Lamouroux, Aquatic plant diversity in riverine wetlands: the role of connectivity, Freshwater Biology, vol.2, issue.2, pp.267-283, 1998.
DOI : 10.1016/0040-5809(77)90039-9

G. Bornette, C. Amoros, H. Piégay, J. Tachet, and T. Hein, Ecological complexity of wetlands within a river landscape, Biological Conservation, vol.85, issue.1-2, pp.35-45, 1998.
DOI : 10.1016/S0006-3207(97)00166-3

C. Bou, Methods to sample in interstitial groundwaters (Les méthodes de récolte dans les eaux souterraines interstitielles), Annls Spéléol, vol.29, pp.611-619, 1974.

C. Bou and R. Rouch, New researches in subterranean aquatic fauna, C R Acad Sci, vol.265, pp.369-370, 1967.

J. Braun-blanquet, Plant Sociology: the Study of Plant Communities. Transl. Fuller GD, Conard HS The Rhône River from the Leman Lake to Lyon City, 1932.

J. Bravard, C. Amoros, and G. Pautou, Impact of Civil Engineering Works on the Successions of Communities in a Fluvial System: A Methodological and Predictive Approach Applied to a Section of the Upper Rhone River, France, Oikos, vol.47, issue.1, pp.92-111, 1986.
DOI : 10.2307/3565924

J. Bravard, C. Amoros, G. Pautou, G. Bornette, M. Bournaud et al., River incision in south-east France: morphological phenomena and ecological effects, Regulated Rivers: Research & Management, vol.7, issue.6, pp.75-90, 1997.
DOI : 10.1002/(SICI)1099-1646(199701)13:1<75::AID-RRR444>3.0.CO;2-6

D. Britto, M. Siddiqi, A. Glass, and H. Kronzucker, Futile transmembrane NH4+ cycling: A cellular hypothesis to explain ammonium toxicity in plants, Proceedings of the National Academy of Sciences, vol.98, issue.7, pp.4255-4258, 2001.
DOI : 10.1073/pnas.061034698

R. Carbiener, M. Trémolières, J. Mercier, and A. Ortscheit, Aquatic macrophyte communities as bioindicators of eutrophication in calcareous oligosaprobe stream waters (Upper Rhine plain, Alsace), Vegetatio, vol.18, issue.2, pp.71-88, 1990.
DOI : 10.1007/BF00045135

D. Carbiener, M. Trémolières, and S. Miuller, V??g??tation des eaux courantes et qualit?? des eaux: une th??se, des d??bats, des perspectives, Acta Botanica Gallica, vol.14, issue.6, pp.489-531, 1995.
DOI : 10.1080/12538078.1995.10515275

C. Claret, P. Marmonier, M. Dole-olivier, and E. Castella, Effects of management works on the interstitial fauna of floodplain aquatic systems (River Rhône, France), Biodiversity and Conservation, vol.8, issue.9, pp.1179-1204, 1999.
DOI : 10.1023/A:1008843726483

M. Dole-olivier and P. Marmonier, Patch distribution of interstitial communities: prevailing factors, Freshwater Biology, vol.4, issue.2, pp.177-191, 1992.
DOI : 10.1007/BF00006106

D. Ferreira, F. Malard, M. Dole-olivier, and J. Gibert, Obligate groundwater fauna of France: diversity patterns and conservation implications, Biodiversity and Conservation, vol.12, issue.454, pp.567-596, 2007.
DOI : 10.1007/s10531-005-0305-7

URL : https://hal.archives-ouvertes.fr/halsde-00153415

M. Fette, R. Kipfer, C. Schubert, E. Hoehn, and B. Wehrli, Assessing river???groundwater exchange in the regulated Rhone River (Switzerland) using stable isotopes and geochemical tracers, Applied Geochemistry, vol.20, issue.4, pp.701-712, 2005.
DOI : 10.1016/j.apgeochem.2004.11.006

G. Gicc-research, Study of Potential Impacts of Global Climate Change in the River Rhone catchment (Etude des impacts potentiels du changement climatique sur le bassin versant du Rhône en vue de leur gestion)., Gicc-Rhône Project, Final revised report final, short version, 2005.

R. Gonfiantini, K. Fröhlich, L. Araguás-araguás, and K. Rozanski, Isotopes in groundwater hydrology Isotope Tracers in Catchment Hydrology, pp.203-246, 1995.

S. Greulich and G. Bornette, Being evergreen in an aquatic habitat with attenuated seasonal contrasts-a major competitive advantage?, Plant Ecology, vol.167, issue.1, pp.9-18, 2003.
DOI : 10.1023/A:1023923418919

URL : https://hal.archives-ouvertes.fr/halshs-00005796

C. Griebler, H. Stein, C. Kellermann, S. Berkhoff, H. Brielmann et al., Ecological assessment of groundwater ecosystems ??? Vision or illusion?, Ecological Engineering, vol.36, issue.9, pp.1174-1190, 2010.
DOI : 10.1016/j.ecoleng.2010.01.010

M. Hayashi and D. Resenberry, Effects of Ground Water Exchange on the Hydrology and Ecology of Surface Water, Ground Water, vol.126, issue.5, pp.309-316, 2002.
DOI : 10.1029/97WR03385

R. Holtzman, U. Shavit, O. Segal-rozenhaimer, I. Gavrieli, A. Marei et al., Quantifying Ground Water Inputs along the Lower Jordan River, Journal of Environment Quality, vol.34, issue.3, pp.897-906, 2005.
DOI : 10.2134/jeq2004.0244

J. Hortness and P. Vidmar, Surface-water/ground-water Interaction along Reaches of the Snake River and Henrys Fork, Scientific Investigations Report, p.5115, 2004.

C. Hydratec-design-office-territoire-rhône, A. Diren-rhône-alpes, R. Jansson, H. Laudon, and E. Johansson, Global Study for a River Rhône Flood Risk Decreasing Strategy (Etude globale pour une stratégie de réduction des risques dus aux crues du Rhône The importance of groundwater discharge for plant species number in riparian zones, EPTB, pp.31-139, 2002.

K. Korbel and G. Hose, A tiered framework for assessing groundwater ecosystem health, Hydrobiologia, vol.27, issue.1, pp.329-349, 2011.
DOI : 10.1007/s10750-010-0541-z

K. Ko?melj, A Methodology for Hydraulic Data Processing (Méthodologie pour le traitement des variables hydriques du Haut-Rhône français), 1982.

S. Lamontagne, F. Leaney, and A. Herczeg, Streamwater-groundwater Interaction: the River Murray at Hattah-Kulkyne Park, Victoria: Summary of Results, CSIRO Land and Water Australia, p.2, 2002.

E. Lucassen, A. Smolders, L. Lamers, and J. Roelofs, Water table fluctuations and groundwater supply are important in preventing phosphate-eutrophication in sulphate-rich fens: Consequences for wetland restoration, Plant and Soil, vol.35, issue.1-2, pp.109-115, 2005.
DOI : 10.1007/s11104-004-0554-3

P. Marmonier and M. Dole, Sediment amphipods of a river Rhône bypassed channel-distribution according to flood reaction, Rev Sci Eau, vol.5, pp.461-486, 1986.

P. Marmonier, C. Claret, and M. Dole-olivier, Interstitial fauna in newly-created floodplain canals of a large regulated river, Regulated Rivers: Research & Management, vol.33, issue.8, pp.23-36, 2000.
DOI : 10.1002/(SICI)1099-1646(200001/02)16:1<23::AID-RRR563>3.0.CO;2-A

P. Michal, B. De-bikuna, and I. Benito, Recharge of a Rhône river valley alluvial aquifer (Modes d'alimentation d'une nappe alluviale : nappe de la vallée du Rhône entre La Balme et Saint-Genix-sur-Guiers-Savoie) Aquatic plants in relation to environmental factors in northern Spain, J Environ Manage, vol.47, pp.123-137, 1988.

F. Paran, F. Malard, J. Mathieu, M. Lafont, D. Galassi et al., Distribution of groundwater invertebrates along an environmental gradient in a shallow water-table aquifer, Proceedings of the Symposium on World Subterranean Biodiversity. CNRS-UCBL, pp.99-106, 2005.
URL : https://hal.archives-ouvertes.fr/halsde-00157693

F. Paran, R. Dechomets, and D. Graillot, Spatial analysis characterization of river/ groundwater exchanges (Identification et quantification des échanges nappes/rivière par analyse spatiale), Géomatique Expert, vol.64, pp.73-79, 2008.

F. Paran, F. Arthaud, G. Bornette, D. Graillot, E. Lalot et al., Characterization of Exchanges between Rhône River and Groundwater Aquifers n°12, 12bis, 12ter et 13, Geologic and Hydrogeological Characteristics of the Rhône Valley and the Guiers Valley-Synthesis of Existing Data, AERMC Rampnoux JP Chambery Sakura Y, vol.215, pp.161-170, 1992.

S. Schmidt, H. Hahn, T. Hatton, and W. Humphreys, Do faunal assemblages reflect the exchange intensity in groundwater zones?, Hydrobiologia, vol.320, issue.1, pp.1-19, 2007.
DOI : 10.1007/s10750-006-0405-8

H. Stein, C. Kellermann, S. Schmidt, H. Brielmann, C. Steube et al., The potential use of fauna and bacteria as ecological indicators for the assessment of groundwater quality, J. Environ. Monit., vol.54, issue.4, pp.242-254, 2010.
DOI : 10.1039/B913484K

C. Steube, S. Richter, and C. Griebler, Primeiras tentativas para definir um conceito integrador na avalia????o ecol??gicados ecossistemas em ??guas subterr??neas, Hydrogeology Journal, vol.9, issue.7, pp.23-35, 2009.
DOI : 10.1007/s10040-008-0346-6

L. Urbano, B. Waldron, D. Larsen, and H. Shook, Groundwater???surfacewater interactions at the transition of an aquifer from unconfined to confined, Journal of Hydrology, vol.321, issue.1-4, pp.200-212, 2006.
DOI : 10.1016/j.jhydrol.2005.08.001

J. Walker and D. Krabbenhoft, Groundwater and surface-water interactions in riparian and lake dominated systems Isotope Tracers in Catchment Hydrology, pp.203-246, 1995.