Phylogeny and biogeography of African Murinae based on mitochondrial and nuclear gene sequences, with a new tribal classification of the subfamily, BMC Evolutionary Biology, vol.8, issue.1, p.199, 2008. ,
DOI : 10.1186/1471-2148-8-199
URL : https://hal.archives-ouvertes.fr/hal-00336780
Systematics of African lowland rainforest Praomys (Rodentia, Muridae) based on molecular and craniometrical data, Zoological Journal of the Linnean Society, vol.145, issue.4, pp.539-553, 2005. ,
DOI : 10.1111/j.1096-3642.2005.00196.x
Confrontation of morphological and molecular data: The Praomys group (Rodentia, Murinae) as a case of adaptive convergences and morphological stasis, Molecular Phylogenetics and Evolution, vol.37, issue.3, pp.899-919, 2005. ,
DOI : 10.1016/j.ympev.2005.06.018
Praomys petteri: une nouvelle espèce de Muridae africains (Mammalia, Rodentia), Bonn Zool Beitr, vol.50, pp.329-345, 2003. ,
Mitochondrial phylogeny of African wood mice, genus Hylomyscus (Rodentia, Muridae): Implications for their taxonomy and biogeography, Molecular Phylogenetics and Evolution, vol.38, issue.3, pp.779-793, 2006. ,
DOI : 10.1016/j.ympev.2005.11.024
URL : https://hal.archives-ouvertes.fr/hal-00022913
(Rodentia: Muridae), and Description of a New Species, Journal of Mammalogy, vol.89, issue.1, pp.222-231, 2008. ,
DOI : 10.1644/06-MAMM-A-286.1
URL : https://hal.archives-ouvertes.fr/hal-00312645
Mitochondrial DNA and morphometrical identification of a new species of Hylomyscus (Rodentia: Muridae) from West Africa, Zootaxa, vol.2579, pp.30-44, 2010. ,
URL : https://hal.archives-ouvertes.fr/hal-00553077
Notes on the Praomys of Angola with the description of a new species (Mammalia: Rodentia: Muridae), pp.121-131, 2008. ,
, a new species of Muridae (Mammalia) from central Africa, South African Journal of Zoology, vol.34, issue.2, pp.80-90, 1999. ,
DOI : 10.1080/02541858.1999.11448492
Systematics and distribution of Praomys from the Masako Forest Reserve (Zaire) with the description of a new species, Vertebrates in the tropics, pp.73-83, 1990. ,
Praomys misonnei, an new species of muridae from eastern Za?¨reZa?¨re, pp.1-11, 1987. ,
(Muridae, Murinae) using combined cytogenetic and molecular data, Journal of Zoology, vol.9, issue.(Suppl. 1), pp.368-374, 2008. ,
DOI : 10.1111/j.1469-7998.2008.00500.x
URL : https://hal.archives-ouvertes.fr/hal-00351317
Molecular identification of four cryptic species of Mastomys (Rodentia, Murinae), Biochemical Systematics and Ecology, vol.33, issue.7, pp.681-689, 2005. ,
DOI : 10.1016/j.bse.2004.12.015
Cytochrome??b-based phylogeny of the Praomys group (Rodentia, Murinae): a new African radiation?, Comptes Rendus Biologies, vol.325, issue.7, pp.827-840, 2002. ,
DOI : 10.1016/S1631-0691(02)01488-9
Molecular and morphometric variation in two sibling species of the genus Praomys (Rodentia: Muridae): implications for biogeography, Zoological Journal of the Linnean Society, vol.160, issue.2, pp.397-419, 2010. ,
DOI : 10.1111/j.1096-3642.2009.00602.x
URL : https://hal.archives-ouvertes.fr/hal-00553224
Novel Arenavirus Sequences in Hylomyscus sp. and Mus (Nannomys) setulosus from C??te d'Ivoire: Implications for Evolution of Arenaviruses in Africa, PLoS ONE, vol.106, issue.6, p.20893, 2011. ,
DOI : 10.1371/journal.pone.0020893.s002
URL : https://hal.archives-ouvertes.fr/pasteur-00643284
Diversity and distribution of murid rodent populations between forest and derived savanna sites within south western Nigeria, Biodiversity and Conservation, vol.73, issue.1, pp.10531-10539, 1007. ,
DOI : 10.1007/s10531-008-9389-1
Petits mammifères terrestres (Soricidés et Muridés) du Complexe d'Aires Protégées de Gamba, Gabon: composition taxinomique et comparaison de méthodes d'e ´chantillonnage, Bull Biol Soc Wash, vol.12, pp.137-148, 2006. ,
A rapid survey of bats from north Lorma, Gola and Grebo forests, Liberia, with notes on other small mammal groups (shrew and rodents). RAP, pp.20-25, 2005. ,
Comparison of multimammate mouse (Mastomys natalensis) demography in monoculture and mosaic agricultural habitat: Implications for pest management, Crop Protection, vol.28, issue.8, pp.647-654, 2009. ,
DOI : 10.1016/j.cropro.2009.03.018
Comparing strategies for controlling an African pest rodent: an empirically based theoretical study, Journal of Applied Ecology, vol.40, issue.Supplement, pp.1020-1031, 2001. ,
DOI : 10.1046/j.1365-2664.2001.00656.x
Potential mammalian reservoirs in a bubonic plague outbreak focus in Mbulu District, northern Tanzania, Mammalia, vol.72, pp.253-257, 2007. ,
A model of Leptospirosis infection in an African rodent to determine risk to humans: Seasonal fluctuations and the impact of rodent control, Acta Tropica, vol.99, issue.2-3, pp.218-225, 2006. ,
DOI : 10.1016/j.actatropica.2006.08.003
s and Lassa Fever, West Africa, Emerging Infectious Diseases, vol.12, issue.12, pp.1971-1974, 2006. ,
DOI : 10.3201/eid1212.060812
Lassa fever in West African subregion: an overview, J Vector Borne Dis, vol.44, pp.1-11, 2007. ,
First Detection of Mycobacteria in African Rodents and Insectivores, Using Stratified Pool Screening, Applied and Environmental Microbiology, vol.74, issue.3, pp.768-773, 2008. ,
DOI : 10.1128/AEM.01193-07
Terrestrial Small Mammals as Reservoirs of Mycobacterium ulcerans in Benin, Applied and Environmental Microbiology, vol.76, issue.13, pp.4574-4577, 2010. ,
DOI : 10.1128/AEM.00199-10
Rapid Survey of the Small Mammals of Ajenjua Bepo and Mamang River Forest Reserves, Ghana, Rapid Biological Assessment of the Ajenjua Bepo and Mamang River Forest Reserves: Conservation International, pp.54-57, 2008. ,
Les rongeurs myomorphes forestiers du nord-est du Gabon: structure du peuplement, démographie, domaines vitaux, Rev Ecol Terre Vie, vol.44, pp.329-346, 1989. ,
Seasonal variations in population and community structure of small rodents in a tropical forest of Gabon, Canadian Journal of Zoology, vol.81, issue.6, pp.1034-1046, 2003. ,
DOI : 10.1139/z03-092
URL : https://hal.archives-ouvertes.fr/hal-01346038
Species richness and abundance of small mammals inside and outside an African national park, Biological Conservation, vol.98, issue.3, pp.251-257, 2001. ,
DOI : 10.1016/S0006-3207(00)00105-1
Spatial distribution of commensal rodents in regions with high and low Lassa fever prevalence in Guinea, Belg J Zool, vol.135, pp.63-67, 2005. ,
Diversity and dynamics in a community of small mammals in coastal guinea, West Africa, Belg J Zool, vol.139, pp.93-102, 2009. ,
Biological identifications through DNA barcodes, Proceedings of the Royal Society B: Biological Sciences, vol.270, issue.1512, pp.313-321, 2003. ,
DOI : 10.1098/rspb.2002.2218
Ten species in one: DNA barcoding reveals cryptic species in the neotropical skipper butterfly Astraptes fulgerator, Proceedings of the National Academy of Sciences, vol.101, issue.41, pp.14812-14817, 2004. ,
DOI : 10.1073/pnas.0406166101
Identification of Birds through DNA Barcodes, PLoS Biology, vol.104, issue.10, p.312, 2004. ,
DOI : 10.1371/journal.pbio.0020312.sg001
Identifying spiders through DNA barcodes, Canadian Journal of Zoology, vol.83, issue.3, pp.481-491, 2005. ,
DOI : 10.1139/z05-024
Identifying Canadian mosquito species through DNA barcodes, Medical and Veterinary Entomology, vol.6, issue.4, pp.413-424, 2006. ,
DOI : 10.1016/S0035-9203(03)00019-1
DNA barcoding Australia's fish species, Philosophical Transactions of the Royal Society B: Biological Sciences, vol.11, issue.6897, pp.1847-1857, 2005. ,
DOI : 10.1093/molbev/msg133
DNA barcoding of Neotropical bats: species identification and discovery within Guyana, Molecular Ecology Notes, vol.16, issue.2, pp.184-190, 2006. ,
DOI : 10.1111/j.1471-8286.2006.01657.x
Identifying Rattus species using mitochondrial DNA, Molecular Ecology Notes, vol.54, issue.5, pp.717-729, 2007. ,
DOI : 10.1007/BF00283833
Revisiting the taxonomy of the Rattini tribe: a phylogeny-based delimitation of species boundaries, BMC Evolutionary Biology, vol.10, issue.1, p.184, 2010. ,
DOI : 10.1186/1471-2148-10-184
URL : https://hal.archives-ouvertes.fr/hal-00521287
The Role of DNA Barcodes in Understanding and Conservation of Mammal Diversity in Southeast Asia, PLoS ONE, vol.24, issue.9, p.12575, 2010. ,
DOI : 10.1371/journal.pone.0012575.g010
Neotropical Bats: Estimating Species Diversity with DNA Barcodes, PLoS ONE, vol.85, issue.7, p.22648, 2011. ,
DOI : 10.1371/journal.pone.0022648.s003
URL : http://doi.org/10.1371/journal.pone.0022648
Four years of DNA barcoding: Current advances and prospects, Infection, Genetics and Evolution, vol.8, issue.5, pp.727-736, 2008. ,
DOI : 10.1016/j.meegid.2008.05.005
URL : https://hal.archives-ouvertes.fr/mnhn-00392451
SEQUENCES AND MAMMALS, Journal of Mammalogy, vol.82, issue.4, pp.960-973, 2001. ,
DOI : 10.1644/1545-1542(2001)082<0960:ATOTGS>2.0.CO;2
Reconstructing Mammalian Phylogenies: A Detailed Comparison of the Cytochrome b and Cytochrome Oxidase Subunit I Mitochondrial Genes, PLoS ONE, vol.5, issue.11, p.14156, 2010. ,
DOI : 10.1371/journal.pone.0014156.s020
Molecular phylogeny of Myomys/Stenocephalemys complex and its relationships with related African genera, Biochemical Systematics and Ecology, vol.29, issue.6, pp.585-596, 2001. ,
DOI : 10.1016/S0305-1978(00)00087-9
Plio-Pleistocene history of West African Sudanian savanna and the phylogeography of the Praomys daltoni complex (Rodentia): the environment/geography/genetic interplay, Molecular Ecology, vol.96, issue.21, pp.4783-4799, 2010. ,
DOI : 10.1111/j.1365-294X.2010.04847.x
URL : https://hal.archives-ouvertes.fr/hal-00553191
Phylogeography of a Sahelian rodent species Mastomys huberti: a Plio-Pleistocene story of emergence and colonization of humid habitats, Molecular Ecology, vol.397, issue.4, pp.1036-1053, 2008. ,
DOI : 10.1111/j.1365-294X.2007.03610.x
) in West Africa: different reactions to past forest fragmentation, Molecular Ecology, vol.9, issue.16), pp.5118-5134, 2008. ,
DOI : 10.1111/j.1365-294X.2008.03974.x
The roles of rivers and Pleistocene refugia in shaping genetic diversity in Praomys misonnei in tropical Africa, Journal of Biogeography, vol.9, issue.1, pp.191-207, 2011. ,
DOI : 10.1111/j.1365-2699.2010.02399.x
URL : https://hal.archives-ouvertes.fr/hal-00558396
): a case study for Sahelian species in West Africa, Journal of Biogeography, vol.14, issue.12, pp.2237-2250, 2009. ,
DOI : 10.1111/j.1365-2699.2009.02184.x
Taxonomy: DNA barcodes: recent successes and future prospects, Heredity, vol.95, issue.4, pp.254-255, 2006. ,
DOI : 10.1038/sj.hdy.6800858
DNA barcode analysis: a comparison of phylogenetic and statistical classification methods, BMC Bioinformatics, vol.10, issue.Suppl 14, p.10, 2009. ,
DOI : 10.1186/1471-2105-10-S14-S10
URL : https://hal.archives-ouvertes.fr/inserm-00663565
Integrating DNA barcode data and taxonomic practice: Determination, discovery, and description, BioEssays, vol.3, issue.2 ,
DOI : 10.1002/bies.201000036
New Heuristic Methods for Joint Species Delimitation and Species Tree Inference, Systematic Biology, vol.59, issue.1, pp.59-73, 2010. ,
DOI : 10.1093/sysbio/syp077
ABGD, Automatic Barcode Gap Discovery for primary species delimitation, Molecular Ecology, vol.75, issue.8, 2011. ,
DOI : 10.1111/j.1365-294X.2011.05239.x
URL : https://hal.archives-ouvertes.fr/hal-00704914
DNA Barcoding: Error Rates Based on Comprehensive Sampling, PLoS Biology, vol.85, issue.12, p.422, 2005. ,
DOI : 10.1371/journal.pbio.0030422.st003
A response to recent proposals for integrative taxonomy, Biological Journal of the Linnean Society, vol.101, issue.3, pp.747-756, 2011. ,
DOI : 10.1111/j.1095-8312.2010.01528.x
Superfamily Muroidea Mammal species of the world: a taxonomic and geographic reference, pp.894-1531, 2005. ,
The impact of the Congo River and its tributaries on the rodent genus Praomys: speciation origin or range expansion limit?, Zoological Journal of the Linnean Society, vol.163, issue.3 ,
DOI : 10.1111/j.1096-3642.2011.00733.x
Extraction of high molecular weight DNA from molluscs, Trends Genet, vol.9, p.407, 1993. ,
An assessment of the systematics of Arvicanthine rodents using mitochondrial DNA sequences: evolutionary and biogeographical implications, Journal of Mammalian Evolution, vol.8, issue.3, pp.173-206, 2001. ,
DOI : 10.1023/A:1012277012303
The Simple Fool's Guide to PCR, 1991. ,
Phylogeny and Evolution of African Shrews (Mammalia: Soricidae) Inferred from 16s rRNA Sequences, Molecular Phylogenetics and Evolution, vol.20, issue.2, pp.185-195, 2001. ,
DOI : 10.1006/mpev.2001.0974
CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice, Nucleic Acids Research, vol.22, issue.22, pp.4673-4680, 1994. ,
DOI : 10.1093/nar/22.22.4673
A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences, Journal of Molecular Evolution, vol.206, issue.5, Nov., pp.111-120, 1980. ,
DOI : 10.1007/BF01731581
PAUP: phylogenetic analysis using parsimony. Version 4b10 ed, 2000. ,
The neighbor-joining method: a new method for reconstructing phylogenetic trees, Mol Biol Evol, vol.4, pp.406-425, 1987. ,
Delimiting Species without Monophyletic Gene Trees, Systematic Biology, vol.56, issue.6, pp.887-895, 2007. ,
DOI : 10.1080/10635150701701091
URL : http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.510.2125
Principles and Theory for Data Mining and Machine Learning, 2009. ,
DOI : 10.1007/978-0-387-98135-2
Discriminatory Analysis. Nonparametric Discrimination: Consistency Properties, International Statistical Review / Revue Internationale de Statistique, vol.57, issue.3, 1951. ,
DOI : 10.2307/1403797
Nearest neighbor pattern classification, IEEE Transactions on Information Theory, vol.13, issue.1, pp.21-27, 1967. ,
DOI : 10.1109/TIT.1967.1053964
Random forests, Machine Learning, vol.45, issue.1, pp.5-32, 2001. ,
DOI : 10.1023/A:1010933404324
Classification and regression trees, 1984. ,
The general lineage concept of species, species criteria and the process of speciation. A conceptual unification and terminological recommendations Endless forms: species and speciation, pp.57-75, 1998. ,
Phylogeography: the history and formation of species, 2000. ,
A DNA barcode for land plants, Proceedings of the National Academy of Sciences, vol.106, issue.31, pp.12794-12797, 2009. ,
DOI : 10.1073/pnas.0905845106
Selecting barcoding loci for plants: evaluation of seven candidate loci with species-level sampling in three divergent groups of land plants, Molecular Ecology Resources, vol.274, issue.2, pp.439-457, 2009. ,
DOI : 10.1111/j.1755-0998.2008.02439.x
Phylogeography of spiny mice (genus Acomys, Rodentia: Muridae) from the south-western margin of the Sahara with taxonomic implications, Biological Journal of the Linnean Society, vol.98, issue.1, pp.29-46, 2009. ,
DOI : 10.1111/j.1095-8312.2009.01273.x
Phylogeographical structure and regional history of Lemniscomys striatus (Rodentia: Muridae) in tropical Africa, J Biogeogr, vol.35, pp.2072-2089, 2008. ,
URL : https://hal.archives-ouvertes.fr/hal-00336791
Phylogenetics of the woodrat genus Neotoma (Rodentia: Muridae): Implications for the evolution of phenotypic variation in male external genitalia, Molecular Phylogenetics and Evolution, vol.42, issue.3, pp.637-652, 2007. ,
DOI : 10.1016/j.ympev.2006.08.011
Evolutionary systematics in African gerbilline rodents of the genus Gerbilliscus: Inference from mitochondrial genes, Molecular Phylogenetics and Evolution, vol.42, issue.3, pp.797-806, 2007. ,
DOI : 10.1016/j.ympev.2006.10.001
Exploring the Use of Cytochrome Oxidase c Subunit 1 (COI) for DNA Barcoding of Free-Living Marine Nematodes, PLoS ONE, vol.38, issue.10, p.13716, 2010. ,
DOI : 10.1371/journal.pone.0013716.s001
DNA Barcoding: Promise and Pitfalls, PLoS Biology, vol.103, issue.10, p.354, 2004. ,
DOI : 10.1371/journal.pbio.0020354
URL : http://doi.org/10.1371/journal.pbio.0020354
A DNA barcode for land plants, Proc Natl Acad Sci U S A, vol.106, pp.12794-12797, 2009. ,
DNA barcoding of African fruit bats (Mammalia, Pteropodidae). The mitochondrial genome does not provide a reliable discrimination between Epomophorus??gambianus and Micropteropus??pusillus, Comptes Rendus Biologies, vol.334, issue.7, pp.544-554, 2011. ,
DOI : 10.1016/j.crvi.2011.05.003