D. L. Berry, R. A. Schwartzman, and D. D. Brown, The Expression Pattern of Thyroid Hormone Response Genes in the Tadpole Tail Identifies Multiple Resorption Programs, Developmental Biology, vol.203, issue.1, pp.12-23, 1998.
DOI : 10.1006/dbio.1998.8974

B. Blaauw, L. Agatea, L. Toniolo, M. Canato, M. Quarta et al., Eccentric contractions lead to myofibrillar dysfunction in muscular dystrophy, Journal of Applied Physiology, vol.108, issue.1, pp.105-111, 2010.
DOI : 10.1152/japplphysiol.00803.2009

T. Boulesteix, E. Beaurepaire, M. P. Sauviat, and M. C. Schanne-klein, Second-harmonic microscopy of unstained living cardiac myocytes:???measurements of sarcomere length with 20-nm accuracy, Optics Letters, vol.29, issue.17, pp.2031-2033, 2004.
DOI : 10.1364/OL.29.002031
URL : https://hal.archives-ouvertes.fr/hal-00836429

A. Buttgereit, C. Weber, C. S. Garbe, and O. Friedrich, From chaos to split-ups - SHG microscopy reveals a specific remodelling mechanism in ageing dystrophic muscle, The Journal of Pathology, vol.113, issue.12, pp.477-485, 2013.
DOI : 10.1002/path.4136

P. J. Campagnola, A. C. Millard, M. Terasaki, P. E. Hoppe, C. J. Malone et al., Three-Dimensional High-Resolution Second-Harmonic Generation Imaging of Endogenous Structural Proteins in Biological Tissues, Biophysical Journal, vol.82, issue.1, pp.493-508, 2002.
DOI : 10.1016/S0006-3495(02)75414-3

M. J. Cullen, J. J. Fulthorpe, and J. B. Harris, The distribution of desmin and titin in normal and dystrophic human muscle, Acta Neuropathologica, vol.7, issue.2, pp.158-169, 1992.
DOI : 10.1007/BF00308475

D. Pasquier, D. Rincheval, V. Sinzelle, L. Chesneau, A. Ballagny et al., Developmental cell death duringXenopus metamorphosis involves BID cleavage and caspase 2 and 8 activation, Developmental Dynamics, vol.278, issue.8, pp.2083-2094, 2006.
DOI : 10.1002/dvdy.20874

M. Endo, Entry of a Dye into the Sarcotubular System of Muscle, Nature, vol.3, issue.4937, pp.1115-1116, 1964.
DOI : 10.1038/2021115b0

E. B. Ezerman and H. Ishikawa, DIFFERENTIATION OF THE SARCOPLASMIC RETICULUM AND T SYSTEM IN DEVELOPING CHICK SKELETAL MUSCLE IN VITRO, The Journal of Cell Biology, vol.35, issue.2, pp.405-420, 1967.
DOI : 10.1083/jcb.35.2.405

C. Franzini-armstrong, D. G. Ferguson, and C. Champ, Discrimination between fast- and slow-twitch fibres of guinea pig skeletal muscle using the relative surface density of junctional transverse tubule membrane, Journal of Muscle Research and Cell Motility, vol.204, issue.5, pp.403-414, 1988.
DOI : 10.1007/BF01774067

O. Friedrich, M. Both, C. Weber, S. Schurmann, M. D. Teichmann et al., Microarchitecture Is Severely Compromised but Motor Protein Function Is Preserved in Dystrophic mdx Skeletal Muscle, Biophysical Journal, vol.98, issue.4, pp.606-616, 2010.
DOI : 10.1016/j.bpj.2009.11.005

K. Fujimoto, K. Nakajima, and Y. Yaoita, Expression of matrix metalloproteinase genes in regressing or remodeling organs during amphibian metamorphosis, Development, Growth & Differentiation, vol.272, issue.Pt 2, pp.131-143, 2007.
DOI : 10.1111/j.1440-169X.2007.00916.x

C. S. Garbe, A. Buttgereit, S. Schurmann, and O. Friedrich, Automated Multiscale Morphometry of Muscle Disease From Second Harmonic Generation Microscopy Using Tensor-Based Image Processing, IEEE Transactions on Biomedical Engineering, vol.59, issue.1, pp.39-44, 2012.
DOI : 10.1109/TBME.2011.2167325

P. Garcia-canadilla, A. Gonzalez-tendero, I. Iruretagoyena, F. Crispi, I. Torre et al., Automated cardiac sarcomere analysis from second harmonic generation images, Journal of Biomedical Optics, vol.19, issue.5, p.56010, 2014.
DOI : 10.1117/1.JBO.19.5.056010

M. Inoue, E. F. Sato, M. Nishikawa, K. Hiramoto, A. Kashiwagi et al., Free radical theory of apoptosis and metamorphosis, Redox Report, vol.262, issue.420, pp.237-247, 2004.
DOI : 10.1016/S0014-5793(97)00494-8

A. Ishizuya-oka, Amphibian organ remodeling during metamorphosis: insight into thyroid hormone-induced apoptosis. Development, growth & differentiation 53, pp.202-212, 2011.

I. D. Jayasinghe and B. S. Launikonis, Three-dimensional reconstruction and analysis of the tubular system of vertebrate skeletal muscle, Journal of Cell Science, vol.126, issue.17, pp.4048-4058, 2013.
DOI : 10.1242/jcs.131565

J. Johnson, W. Manzo, E. Gardner, and J. Menon, Reactive oxygen species and anti-oxidant defenses in tail of tadpoles, Xenopus laevis, Comparative Biochemistry and Physiology Part C: Toxicology & Pharmacology, vol.158, issue.2, pp.101-108, 2013.
DOI : 10.1016/j.cbpc.2013.05.003

A. Kashiwagi, H. Hanada, M. Yabuki, T. Kanno, R. Ishisaka et al., Thyroxine enhancement and the role of reactive oxygen species in tadpole tail apoptosis, Free Radical Biology and Medicine, vol.26, issue.7-8, pp.1001-1009, 1999.
DOI : 10.1016/S0891-5849(98)00296-2

J. F. Kerr, A. H. Wyllie, and A. R. Currie, Apoptosis: A Basic Biological Phenomenon with Wideranging Implications in Tissue Kinetics, British Journal of Cancer, vol.26, issue.4, pp.239-257, 1972.
DOI : 10.1038/bjc.1972.33

J. F. Kerr, B. Harmon, and J. Searle, An electron-microscope study of cell deletion in the anuran tadpole tail during spontaneous metamorphosis with special reference to apoptosis of striated muscle fibers, Journal of cell science, vol.14, pp.571-585, 1974.

B. S. Launikonis and D. G. Stephenson, Tubular system volume changes in twitch fibres from toad and rat skeletal muscle assessed by confocal microscopy, The Journal of Physiology, vol.17, issue.2, pp.607-618, 2002.
DOI : 10.1113/jphysiol.2001.012920

M. E. Llewellyn, R. P. Barretto, S. L. Delp, and M. J. Schnitzer, Minimally invasive highspeed imaging of sarcomere contractile dynamics in mice and humans, Nature, vol.454, pp.784-788, 2008.

J. Menon and R. Rozman, Oxidative stress, tissue remodeling and regression during amphibian metamorphosis, Comparative Biochemistry and Physiology Part C: Toxicology & Pharmacology, vol.145, issue.4, pp.625-631, 2007.
DOI : 10.1016/j.cbpc.2007.02.011

J. B. Miller, S. B. Teal, and F. E. Stockdale, Evolutionarily conserved sequences of striated muscle myosin heavy chain isoforms. Epitope mapping by cDNA expression, The Journal of biological chemistry, vol.264, pp.13122-13130, 1989.

K. Nakajima, K. Fujimoto, and Y. Yaoita, Regulation of thyroid hormone sensitivity by differential expression of the thyroid hormone receptor during Xenopus metamorphosis, Genes to Cells, vol.355, issue.8, pp.645-659, 2012.
DOI : 10.1111/j.1365-2443.2012.01614.x

V. Nucciotti, C. Stringari, L. Sacconi, F. Vanzi, L. Fusi et al., Probing myosin structural conformation in vivo by second-harmonic generation microscopy, Proceedings of the National Academy of Sciences of the United States of America, pp.7763-7768, 2010.
DOI : 10.1073/pnas.0914782107

S. G. Page, A COMPARISON OF THE FINE STRUCTURES OF FROG SLOW AND TWITCH MUSCLE FIBRES, The Journal of Cell Biology, vol.26, issue.2, pp.477-497, 1965.
DOI : 10.1083/jcb.26.2.477

T. A. Partridge, The mdx mouse model as a surrogate for Duchenne muscular dystrophy, FEBS Journal, vol.22, issue.17, pp.4177-4186, 2013.
DOI : 10.1111/febs.12267

S. V. Plotnikov, A. C. Millard, P. J. Campagnola, and W. A. Mohler, Characterization of the Myosin-Based Source for Second-Harmonic Generation from Muscle Sarcomeres, Biophysical Journal, vol.90, issue.2, pp.693-703, 2006.
DOI : 10.1529/biophysj.105.071555

S. V. Plotnikov, A. M. Kenny, S. J. Walsh, B. Zubrowski, C. Joseph et al., Measurement of muscle disease by quantitative second-harmonic generation imaging, Journal of Biomedical Optics, vol.13, issue.4, p.44018, 2008.
DOI : 10.1117/1.2967536

K. R. Porter and G. E. Palade, STUDIES ON THE ENDOPLASMIC RETICULUM: III. ITS FORM AND DISTRIBUTION IN STRIATED MUSCLE CELLS, The Journal of Cell Biology, vol.3, issue.2, pp.269-300, 1957.
DOI : 10.1083/jcb.3.2.269

N. Prent, C. Green, C. Greenhalgh, R. Cisek, A. Major et al., Intermyofilament dynamics of myocytes revealed by second harmonic generation microscopy, Journal of Biomedical Optics, vol.13, issue.4, 2008.
DOI : 10.1117/1.2950316.1

E. Ralston, B. Swaim, M. Czapiga, W. L. Hwu, Y. H. Chien et al., Detection and imaging of non-contractile inclusions and sarcomeric anomalies in skeletal muscle by second harmonic generation combined with two-photon excited fluorescence, Journal of Structural Biology, vol.162, issue.3, pp.500-508, 2008.
DOI : 10.1016/j.jsb.2008.03.010

G. Recher, D. Rouède, E. Schaub, and F. Tiaho, Skeletal muscle sarcomeric SHG patterns photo-conversion by femtosecond infrared laser, Biomedical Optics Express, vol.2, issue.2, pp.374-384, 2011.
DOI : 10.1364/BOE.2.000374
URL : https://hal.archives-ouvertes.fr/hal-00697462

G. Recher, D. Rouede, C. Tascon, L. A. D-'amico, and F. Tiaho, Double-band sarcomeric SHG pattern induced by adult skeletal muscles alteration during myofibrils preparation, Journal of Microscopy, vol.45, issue.2, pp.207-211, 2011.
DOI : 10.1111/j.1365-2818.2010.03425.x
URL : https://hal.archives-ouvertes.fr/hal-00586716

G. Recher, D. Rouede, P. Richard, A. Simon, J. J. Bellanger et al., Three distinct sarcomeric patterns of skeletal muscle revealed by SHG and TPEF Microscopy, Optics Express, vol.17, issue.22, pp.19763-19777, 2009.
DOI : 10.1364/OE.17.019763
URL : https://hal.archives-ouvertes.fr/hal-00444944

D. Rouede, J. J. Bellanger, G. Recher, and F. Tiaho, Study of the effect of myofibrillar misalignment on the sarcomeric SHG intensity pattern, Optics Express, vol.21, issue.9, pp.11404-11414, 2013.
DOI : 10.1364/OE.21.011404
URL : https://hal.archives-ouvertes.fr/hal-00820260

D. Rouede, J. J. Bellanger, E. Schaub, G. Recher, and F. Tiaho, Theoretical and Experimental SHG Angular Intensity Patterns from Healthy and Proteolysed Muscles, Biophysical Journal, vol.104, issue.9, pp.1959-1968, 2013.
DOI : 10.1016/j.bpj.2013.02.047
URL : https://hal.archives-ouvertes.fr/hal-00825645

D. Rouede, G. Recher, J. J. Bellanger, M. T. Lavault, E. Schaub et al., Modeling of Supramolecular Centrosymmetry Effect on Sarcomeric SHG??Intensity Pattern of Skeletal Muscles, Biophysical Journal, vol.101, issue.2, pp.494-503, 2011.
DOI : 10.1016/j.bpj.2011.05.065
URL : https://hal.archives-ouvertes.fr/hal-00616830

D. Rouede, P. Coumailleau, E. Schaub, J. J. Bellanger, M. Blanchard-desce et al., Myofibrillar misalignment correlated to triad disappearance of mdx mouse gastrocnemius muscle probed by SHG microscopy, Biomedical Optics Express, vol.5, issue.3, pp.858-875, 2014.
DOI : 10.1364/BOE.5.000858
URL : https://hal.archives-ouvertes.fr/hal-00952823

I. Rowe, L. Blay, K. Du-pasquier, D. Palmier, K. Levi et al., Apoptosis of tail muscle during amphibian metamorphosis involves a caspase 9-dependent mechanism, Developmental Dynamics, vol.272, issue.1, pp.76-87, 2005.
DOI : 10.1002/dvdy.20312
URL : https://hal.archives-ouvertes.fr/hal-00113238

T. Shimizu, J. E. Dennis, T. Masaki, and D. A. Fischman, Axial arrangement of the myosin rod in vertebrate thick filaments: immunoelectron microscopy with a monoclonal antibody to light meromyosin, The Journal of Cell Biology, vol.101, issue.3, pp.1115-1123, 1985.
DOI : 10.1083/jcb.101.3.1115

C. Soeller and M. B. Cannell, Examination of the Transverse Tubular System in Living Cardiac Rat Myocytes by 2-Photon Microscopy and Digital Image??Processing Techniques, Circulation Research, vol.84, issue.3, pp.266-275, 1999.
DOI : 10.1161/01.RES.84.3.266

H. Takekura, N. Fujinami, T. Nishizawa, H. Ogasawara, and N. Kasuga, Eccentric exercise-induced morphological changes in the membrane systems involved in excitation-contraction coupling in rat skeletal muscle, The Journal of Physiology, vol.75, issue.2, pp.571-583, 2001.
DOI : 10.1111/j.1469-7793.2001.0571a.x

N. A. Thornberry, The caspase family of cysteine proteases, British Medical Bulletin, vol.53, issue.3, pp.478-490, 1997.
DOI : 10.1093/oxfordjournals.bmb.a011625

J. G. Tidball and M. Wehling-henricks, The role of free radicals in the pathophysiology of muscular dystrophy, Journal of Applied Physiology, vol.102, issue.4, pp.1677-1686, 2007.
DOI : 10.1152/japplphysiol.01145.2006

E. Veratti, INVESTIGATIONS ON THE FINE STRUCTURE OF STRIATED MUSCLE FIBER, The Journal of Cell Biology, vol.10, issue.4, pp.1-59, 1902.
DOI : 10.1083/jcb.10.4.1

E. W. Yeung, C. D. Balnave, H. J. Ballard, J. P. Bourreau, and D. G. Allen, Development of T-tubular vacuoles in eccentrically damaged mouse muscle fibres, The Journal of Physiology, vol.92, issue.2, pp.581-592, 2002.
DOI : 10.1113/jphysiol.2001.013839