The ReproGenomics Viewer: an integrative cross-species toolbox for the reproductive science community.

Thomas A Darde 1, 2 Olivier Sallou 1 Emmanuelle Becker 2 Bertrand Evrard 2 Cyril Monjoeaud 1 Yvan Le Bras 1 Bernard Jégou 3, 2 Olivier Collin 1 Antoine D. Rolland 2 Frédéric Chalmel 2
1 Plateforme bioinformatique GenOuest [Rennes]
IRISA - Institut de Recherche en Informatique et Systèmes Aléatoires, UR1 - Université de Rennes 1, Plateforme Génomique Santé Biogenouest®, Inria Rennes – Bretagne Atlantique
2 Irset - Institut de recherche, santé, environnement et travail
3 EHESP - École des Hautes Études en Santé Publique [EHESP]
Abstract : We report the development of the ReproGenomics Viewer (RGV), a multi-and cross-species working environment for the visualization, mining and comparison of published omics data sets for the reproductive science community. The system currently embeds 15 published data sets related to gametogenesis from nine model organisms. Data sets have been curated and conveniently organized into broad categories including biological topics, technologies, species and publications. RGV's modular design for both organisms and genomic tools enables users to upload and compare their data with that from the data sets embedded in the system in a cross-species manner. The RGV is freely available at http://rgv.genouest.org.
Document type :
Journal articles
Complete list of metadatas

Cited literature [49 references]  Display  Hide  Download
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01146120
Contributor : Laurent Jonchère <>
Submitted on : Monday, April 27, 2015 - 4:40:13 PM
Last modification on : Thursday, July 11, 2019 - 1:00:39 AM
Long-term archiving on : Monday, September 14, 2015 - 2:07:02 PM

File

nar.gkv345.full.pdf
Publisher files allowed on an open archive

Identifiers

Collections

UNIV-RENNES1 | IRSET | INRIA | BIOSIT | UR1-UFR-SVE | INSTITUT-TELECOM | IRISA | EHESP | USPC | UR1-UFR-ISTIC | CENTRALESUPELEC | UNIV-ANGERS | IRSET-8 | IRSET-EHESP | UNIV-RENNES | INSA-GROUPE

Citation

Thomas A Darde, Olivier Sallou, Emmanuelle Becker, Bertrand Evrard, Cyril Monjoeaud, et al.. The ReproGenomics Viewer: an integrative cross-species toolbox for the reproductive science community.. Nucleic Acids Research, Oxford University Press, 2015, 43, pp.8. ⟨10.1093/nar/gkv345⟩. ⟨hal-01146120⟩

Export

BibTeX TEI DC DCterms EndNote

Share

Metrics

Record views

698

Files downloads

849