The ReproGenomics Viewer: an integrative cross-species toolbox for the reproductive science community.

Thomas A Darde (1, 2) , Olivier Sallou (1) , Emmanuelle Becker (2) , Bertrand Evrard (2) , Cyril Monjoeaud (1) , Yvan Le Bras (1) , Bernard Jégou (3, 2) , Olivier Collin (1) , Antoine D. Rolland (2) , Frédéric Chalmel (2)

1 Plateforme bioinformatique GenOuest [Rennes]
2 Irset - Institut de recherche en santé, environnement et travail
3 EHESP - École des Hautes Études en Santé Publique [EHESP]

We report the development of the ReproGenomics Viewer (RGV), a multi-and cross-species working environment for the visualization, mining and comparison of published omics data sets for the reproductive science community. The system currently embeds 15 published data sets related to gametogenesis from nine model organisms. Data sets have been curated and conveniently organized into broad categories including biological topics, technologies, species and publications. RGV's modular design for both organisms and genomic tools enables users to upload and compare their data with that from the data sets embedded in the system in a cross-species manner. The RGV is freely available at http://rgv.genouest.org.

Keywords: The ReproGenomics Viewer (RGV); Data sets

Domains: Life Sciences [q-bio]; Computer Science [cs]; Information Retrieval [cs.IR]

Thomas A Darde, Olivier Sallou, Emmanuelle Becker, Bertrand Evrard, Cyril Monjoeaud, et al.. The ReproGenomics Viewer: an integrative cross-species toolbox for the reproductive science community.. Nucleic Acids Research, 2015, 43 (W1), pp.8. ⟨10.1093/nar/gkv345⟩. ⟨hal-01146120⟩