G. Cagney, S. Park, C. Chung, B. Tong, O. Dushlaine et al., Human Tissue Profiling with Multidimensional Protein Identification Technology, Journal of Proteome Research, vol.4, issue.5, pp.1757-1767, 2005.
DOI : 10.1021/pr0500354

P. Calvel, A. Rolland, B. Jégou, and C. Pineau, Testicular postgenomics: targeting the regulation of spermatogenesis, Philosophical Transactions of the Royal Society B: Biological Sciences, vol.5, issue.9, pp.1481-1500, 2010.
DOI : 10.1021/pr0600733
URL : https://hal.archives-ouvertes.fr/inserm-00518191

F. Chalmel, A. Rolland, C. Niederhauser-wiederkehr, S. Chung, P. Demougin et al., The conserved transcriptome in human and rodent male gametogenesis, Proceedings of the National Academy of Sciences of the United States of America, pp.8346-8351, 2007.
DOI : 10.1073/pnas.0701883104
URL : https://hal.archives-ouvertes.fr/hal-00653273

F. Chalmel, A. Lardenois, B. Evrard, R. Mathieu, C. Feig et al., Global human tissue profiling and protein network analysis reveals distinct levels of transcriptional germline-specificity and identifies target genes for male infertility, Human Reproduction, vol.27, issue.11, pp.3233-3248, 2012.
DOI : 10.1093/humrep/des301
URL : https://hal.archives-ouvertes.fr/hal-00877243

F. Chalmel, E. Com, R. Lavigne, N. Hernio, A. Teixeira-gomes et al., An Integrative Omics Strategy to Assess the Germ Cell Secretome and to Decipher Sertoli-Germ Cell Crosstalk in the Mammalian Testis, PLoS ONE, vol.73, issue.8, p.104418, 2014.
DOI : 10.1371/journal.pone.0104418.s001
URL : https://hal.archives-ouvertes.fr/hal-01129957

S. Chocu, P. Calvel, A. Rolland, and C. Pineau, Spermatogenesis in mammals: proteomic insights, Systems Biology in Reproductive Medicine, vol.5, issue.4, pp.179-190, 2012.
DOI : 10.1016/j.devcel.2007.01.002
URL : https://hal.archives-ouvertes.fr/hal-00877749

S. Chocu, B. Evrard, R. Lavigne, A. Rolland, F. Aubry et al., Forty-four novel protein-coding loci discovered using a proteomics informed by transcriptomics (PIT) approach in rat male germ cells, Biology of Reproduction, vol.91, p.123, 2014.
URL : https://hal.archives-ouvertes.fr/hal-01121802

T. Darde, O. Sallou, E. Becker, B. Evrard, C. Monjeaud et al., The ReproGenomics Viewer: an integrative cross-species toolbox for the reproductive science community, Nucleic Acids Research, vol.43, issue.W1, 2015.
DOI : 10.1093/nar/gkv345
URL : https://hal.archives-ouvertes.fr/hal-01146120

D. Djureinovic, L. Fagerberg, B. Hallström, A. Danielsson, C. Lindskog et al., The human testis-specific proteome defined by transcriptomics and antibody-based profiling, MHR: Basic science of reproductive medicine, vol.20, issue.6, pp.476-488, 2014.
DOI : 10.1093/molehr/gau018

J. Doyle, J. Dougherty, M. Heiman, E. Schmidt, T. Stevens et al., Application of a Translational Profiling Approach for the Comparative Analysis of CNS Cell Types, Cell, vol.135, issue.4, pp.749-762, 2008.
DOI : 10.1016/j.cell.2008.10.029

V. Evans, G. Barker, K. Heesom, J. Fan, C. Bessant et al., De novo derivation of proteomes from transcriptomes for transcript and protein identification, Nature Methods, vol.56, issue.12, pp.1207-1211, 2012.
DOI : 10.1128/JVI.01748-10

A. Rolland, R. Lavigne, C. Dauly, P. Calvel, C. Kervarrec et al., Identification of genital tract markers in the human seminal plasma using an integrative genomics approach, Human Reproduction, vol.28, issue.1, pp.199-209, 2013.
DOI : 10.1093/humrep/des360
URL : https://hal.archives-ouvertes.fr/inserm-00814146

E. Sanz, R. Evanoff, A. Quintana, E. Evans, J. Miller et al., RiboTag Analysis of Actively Translated mRNAs in Sertoli and Leydig Cells In Vivo, PLoS ONE, vol.334, issue.6, 2013.
DOI : 10.1371/journal.pone.0066179.s017

R. Schmid, S. Grellscheid, I. Ehrmann, C. Dalgliesh, M. Danilenko et al., The splicing landscape is globally reprogrammed during male meiosis, Nucleic Acids Research, vol.41, issue.22, pp.10170-10184, 2013.
DOI : 10.1093/nar/gkt811

A. Solari, The Behavior of the XY Pair in Mammals, International Review of Cytology, vol.38, pp.273-317, 1974.
DOI : 10.1016/S0074-7696(08)60928-6

M. Soumillon, A. Necsulea, M. Weier, D. Brawand, X. Zhang et al., Cellular Source and Mechanisms of High Transcriptome Complexity in the Mammalian Testis, Cell Reports, vol.3, issue.6, pp.2179-2190, 2013.
DOI : 10.1016/j.celrep.2013.05.031
URL : https://hal.archives-ouvertes.fr/hal-00852777

K. Tsioris, A. Torres, T. Douce, and J. Love, A New Toolbox for Assessing Single Cells, Annual Review of Chemical and Biomolecular Engineering, vol.5, issue.1, pp.455-477, 2014.
DOI : 10.1146/annurev-chembioeng-060713-035958

J. Turner, Meiotic sex chromosome inactivation, Development, vol.134, issue.10, pp.1823-1831, 2007.
DOI : 10.1242/dev.000018
URL : https://hal.archives-ouvertes.fr/hal-01229825

M. Uhlen, P. Oksvold, L. Fagerberg, E. Lundberg, K. Jonasson et al., Towards a knowledge-based Human Protein Atlas, Nature Biotechnology, vol.9, issue.12, pp.1248-1250, 2010.
DOI : 10.1038/msb.2009.93

M. Uhlen, L. Fagerberg, B. Hallstrom, C. Lindskog, P. Oksvold et al., Tissue-based map of the human proteome, Science, vol.347, issue.6220, pp.1260419-1260419, 2015.
DOI : 10.1126/science.1260419

C. Voolstra, D. Tautz, P. Farbrother, L. Eichinger, and B. Harr, Contrasting evolution of expression differences in the testis between species and subspecies of the house mouse, Genome Research, vol.17, issue.1, pp.42-49, 2007.
DOI : 10.1101/gr.5683806

A. Vourekas, Q. Zheng, P. Alexiou, M. Maragkakis, Y. Kirino et al., Mili and Miwi target RNA repertoire reveals piRNA biogenesis and function of Miwi in spermiogenesis, Nature Structural & Molecular Biology, vol.48, issue.8, pp.773-781, 2012.
DOI : 10.1038/nsmb.2347

G. Wang, Y. Guo, T. Zhou, X. Shi, Y. J. Yang et al., In-depth proteomic analysis of the human sperm reveals complex protein compositions, Journal of Proteomics, vol.79, pp.114-122, 2013.
DOI : 10.1016/j.jprot.2012.12.008

X. Wang, Q. Liu, and B. Zhang, Leveraging the complementary nature of RNA-Seq and shotgun proteomics data, PROTEOMICS, vol.49, issue.Suppl 8, pp.2676-2687, 2014.
DOI : 10.1002/pmic.201400184

M. Wilhelm, J. Schlegl, H. Hahne, M. Gholami, A. Lieberenz et al., Mass-spectrometry-based draft of the human proteome, Nature, vol.4, issue.7502, pp.582-587, 2014.
DOI : 10.1038/nature13319

D. Wishart, C. Knox, A. Guo, D. Cheng, S. Shrivastava et al., DrugBank: a knowledgebase for drugs, drug actions and drug targets, Nucleic Acids Research, vol.36, issue.Database, pp.901-906, 2008.
DOI : 10.1093/nar/gkm958

Q. Xu, B. Modrek, and C. Lee, Genome-wide detection of tissue-specific alternative splicing in the human transcriptome, Nucleic Acids Research, vol.30, issue.17, pp.3754-3766, 2002.
DOI : 10.1093/nar/gkf492

G. Yeo, D. Holste, G. Kreiman, and C. Burge, Variation in alternative splicing across human tissues, Genome Biology, vol.5, issue.10, p.74, 2004.
DOI : 10.1186/gb-2004-5-10-r74

P. Zhang, J. Kang, L. Gou, J. Wang, Y. Xue et al., MIWI and piRNA-mediated cleavage of messenger RNAs in mouse testes, Cell Research, vol.63, issue.2, pp.193-207, 2015.
DOI : 10.1101/gr.849004