PepPSy: a web server to prioritize gene products in experimental and biocuration workflows - Archive ouverte HAL Access content directly
Journal Articles Database - The journal of Biological Databases and Curation Year : 2016

PepPSy: a web server to prioritize gene products in experimental and biocuration workflows

(1, 2) , (3) , (4) , (2, 1) , (3, 5) , (4)
1
2
3
4
5

Abstract

Among the 20 000 human gene products predicted from genome annotation, about 3000 still lack validation at protein level. We developed PepPSy, a user-friendly gene expression-based prioritization system, to help investigators to determine in which human tissues they should look for an unseen protein. PepPSy can also be used by biocurators to revisit the annotation of specific categories of proteins based on the 'omics' data housed by the system. In this study, it was used to prioritize 21 dubious protein-coding genes among the 616 annotated in neXtProt for reannotation.

Dates and versions

hal-01342472 , version 1 (06-07-2016)

Identifiers

Cite

Olivier Sallou, Paula D. Duek, Thomas A. Darde, Olivier Collin, Lydie Lane, et al.. PepPSy: a web server to prioritize gene products in experimental and biocuration workflows. Database - The journal of Biological Databases and Curation, 2016, 2016, pp.baw070. ⟨10.1093/database/baw070⟩. ⟨hal-01342472⟩
313 View
0 Download

Altmetric

Share

Gmail Facebook Twitter LinkedIn More