The Human Proteome Organization: A Mission to Advance Proteome Knowledge, Mol. Cell. Proteomics MCP, vol.1, issue.6, pp.413-414, 2002. ,
The Human Proteome Project: Current State and Future Direction, Mol. Cell. Proteomics MCP, 2011. ,
Metrics from the HUPO Human Proteome Project, Progress on Identifying and Characterizing the Human Proteome, vol.17, pp.4031-4041, 2018. ,
Initial Sequencing and Analysis of the Human Genome, Nature, vol.409, issue.6822, pp.860-921, 2001. ,
The Sequence of the Human Genome, Science, vol.291, issue.5507, pp.1304-1351, 2001. ,
URL : https://hal.archives-ouvertes.fr/hal-00465088
, Progress on Identifying and Characterizing the Human Proteome: 2019 Metrics from the HUPO Human Proteome Project, 2019.
The Chromosome-Centric Human Proteome Project for Cataloging Proteins Encoded in the Genome, Nat. Biotechnol, vol.2012, issue.3, pp.221-223 ,
Metrics for the Human Proteome Project 2013-2014 and Strategies for Finding Missing Proteins, J. Proteome Res, vol.13, issue.1, pp.15-20, 2014. ,
Metrics for the Human Proteome Project 2015: Progress on the Human Proteome and Guidelines for High-Confidence Protein Identification, J. Proteome Res, vol.14, issue.9, pp.3452-3460, 2015. ,
Metrics for the Human Proteome Project 2016: Progress on Identifying and Characterizing the Human Proteome, Including Post-Translational Modifications, J. Proteome Res, vol.15, issue.11, pp.3951-3960, 2016. ,
Progress on the HUPO Draft Human Proteome: 2017 Metrics of the Human Proteome Project, J. Proteome Res, vol.16, issue.12, pp.4281-4287, 2017. ,
, The NeXtProt Knowledgebase on Human Proteins: Current Status. Nucleic Acids Res, p.43, 2015.
Integration with the Human Genome of Peptide Sequences Obtained by High-Throughput Mass Spectrometry, Genome Biol, vol.6, issue.1, 2005. ,
The PeptideAtlas Project, Nucleic Acids Res, vol.34, pp.655-658, 2006. ,
State of the Human Proteome in 2014/2015 As Viewed through PeptideAtlas: Enhancing Accuracy and Coverage through the AtlasProphet, J. Proteome Res, vol.14, issue.9, pp.3461-3473, 2015. ,
, Proteomics. Tissue-Based Map of the Human Proteome. Science, vol.347, issue.6220, p.1260419, 2015.
ProteomeXchange Provides Globally Coordinated Proteomics Data Submission and Dissemination, Nat. Biotechnol, vol.32, issue.3, pp.223-226, 2014. ,
The ProteomeXchange Consortium in 2017: Supporting the Cultural Change in Proteomics Public Data Deposition, Nucleic Acids Res, vol.45, issue.D1, pp.1100-1106, 2017. ,
Human Proteome Project Mass Spectrometry Data Interpretation Guidelines 2.1, J. Proteome Res, vol.15, issue.11, pp.3961-3970, 2016. ,
URL : https://hal.archives-ouvertes.fr/hal-02191414
Metrics for the Human Proteome Project 2013-2014 and Strategies for Finding Missing Proteins, J. Proteome Res, vol.13, issue.1, pp.15-20, 2014. ,
Human SRMAtlas: A Resource of Targeted Assays to Quantify the Complete Human Proteome, Cell, vol.166, issue.3, pp.766-778, 2016. ,
The Proteomics Standards Initiative, Proteomics, vol.3, issue.7, pp.1374-1376, 2003. ,
Development of Data Representation Standards by the Human Proteome Organization Proteomics Standards Initiative, J. Am. Med. Inform. Assoc. JAMIA, vol.2015, issue.3, pp.495-506 ,
Proteomics Standards Initiative: Fifteen Years of Progress and Future Work, J. Proteome Res, vol.16, issue.12, pp.4288-4298, 2017. ,
Selected Reaction Monitoring-Based Proteomics: Workflows, Potential, Pitfalls and Future Directions, Nat. Methods, vol.2012, issue.6, pp.555-566 ,
Parallel Reaction Monitoring: A Targeted Experiment Performed Using High Resolution and High Mass Accuracy Mass Spectrometry, Int. J. Mol. Sci, vol.2015, issue.12, pp.28566-28581 ,
Targeted Data Extraction of the MS/MS Spectra Generated by Data-Independent Acquisition: A New Concept for Consistent and Accurate Proteome Analysis, Mol. Cell. Proteomics MCP, vol.2012, issue.6 ,
Biomedical Applications of Ion Mobility-Enhanced Data-Independent Acquisition-Based Label-Free Quantitative Proteomics, Expert Rev. Proteomics, vol.11, issue.6, pp.675-684, 2014. ,
OpenSWATH Enables Automated, Targeted Analysis of Data-Independent Acquisition MS Data, Nat. Biotechnol, vol.32, issue.3, pp.219-223, 2014. ,
Extending the Limits of Quantitative Proteome Profiling with Data-Independent Acquisition and Application to Acetaminophen-Treated Three-Dimensional Liver Microtissues, Mol. Cell. Proteomics MCP, vol.14, issue.5, pp.1400-1410, 2015. ,
DIA-Umpire: Comprehensive Computational Framework for Data-Independent Acquisition Proteomics, Nat. Methods, vol.12, issue.3, p.264, 2015. ,
Initial Guidelines for Manuscripts Employing Data-Independent Acquisition Mass Spectrometry for Proteomic Analysis, Mol. Cell. Proteomics MCP, vol.2019, issue.1, pp.1-2 ,
The NeXtProt Peptide Uniqueness Checker: A Tool for the Proteomics Community, Bioinforma. Oxf. Engl, vol.2017, issue.21, pp.3471-3472 ,
Flexible and Fast Mapping of Peptides to a Proteome with ProteoMapper, J. Proteome Res, vol.17, issue.12, pp.4337-4344, 2018. ,
LysargiNase Mirrors Trypsin for Protein C-Terminal and Methylation-Site Identification, Nat. Methods, vol.12, issue.1, pp.55-58, 2015. ,
, The Proteomics Identifications Database, vol.5, pp.3537-3545, 2005.
The PRIDE Database and Related Tools and Resources in 2019: Improving Support for Quantification Data, Nucleic Acids Res, vol.47, issue.D1, pp.442-450, 2019. ,
ProteinExplorer: A Repository-Scale Resource for Exploration of Protein Detection in Public Mass Spectrometry Data Sets, J. Proteome Res, vol.17, issue.12, pp.4227-4234, 2018. ,
The JPOST Environment: An Integrated Proteomics Data Repository and Database, Nucleic Acids Res, vol.47, issue.D1, pp.1218-1224, 2019. ,
A Uniform Proteomics MS/MS Analysis Platform Utilizing Open XML File Formats, Mol. Syst. Biol, 2005. ,
, A Guided Tour of the Trans-Proteomic Pipeline. Proteomics, issue.6, pp.1150-1159, 2010.
Trans-Proteomic Pipeline, a Standardized Data Processing Pipeline for Large-Scale Reproducible Proteomics Informatics, Proteomics Clin. Appl, vol.2015, issue.7-8, pp.745-754 ,
Chromosome X Project Team of JProS. Identification and Validation of Human Missing Proteins and Peptides in Public Proteome Databases: Data Mining Strategy, J. Proteome Res, vol.16, issue.12, pp.4403-4414, 2017. ,
Deep Dive on the Proteome of Human Cerebrospinal Fluid: A Valuable Data Resource for Biomarker Discovery and Missing Protein Identification, J. Proteome Res, 2018. ,
COSMIC: Somatic Cancer Genetics at High-Resolution, Nucleic Acids Res, vol.45, issue.D1, pp.777-783, 2017. ,
Multi-Protease Strategy Identifies Three PE2 Missing Proteins in Human Testis Tissue, J. Proteome Res, vol.16, issue.12, pp.4352-4363, 2017. ,
Site-Specific Mapping of the Human SUMO Proteome Reveals Co-Modification with Phosphorylation, Nat. Struct. Mol. Biol, vol.2017, issue.3, pp.325-336 ,
Analyzing the First Drafts of the Human Proteome, J. Proteome Res, vol.13, issue.8, pp.3854-3855, 2014. ,
Identification of Missing Proteins in Human Olfactory Epithelial Tissue by Liquid Chromatography-Tandem Mass Spectrometry, J. Proteome Res, 2018. ,