E. A. Alcid and T. Tsukiyama, Expansion of an sense lncRNA transcriptomes in budding yeast species since the loss of RNAi, Nature Structural and Molecular Biology, vol.23, issue.5, pp.450-455, 2016.

R. R. Barrales, J. Jimenez, and J. I. Ibeas, Iden fica on of novel ac va on mechanisms for FLO11 regula on in Saccharomyces cerevisiae, Gene cs, vol.178, issue.1, pp.145-156, 2008.

R. R. Barrales, P. Korber, J. Jimenez, and J. I. Ibeas, Chroma n modula on at the FLO11 promoter of Saccharomyces cerevisiae by HDAC and Swi/Snf complexes, Gene cs, vol.191, issue.3, pp.791-803, 2012.

E. Becker, E. Com, R. Lavigne, M. H. Guilleux, B. Evrard et al., The protein expression landscape of mitosis and meiosis in diploid budding yeast, Journal of Proteomics, vol.156, pp.5-19, 2017.
URL : https://hal.archives-ouvertes.fr/hal-01485858

J. P. Bourdineaud, . Van-der, J. M. Vaart, M. Donzeau, G. De-sampaïo et al., Pmt1 mannosyl transferase is involved in cell wall incorpora on of several proteins in Saccharomyces cerevisiae, Molecular Microbiology, vol.27, issue.1, pp.85-98, 1998.

S. L. Bumgarner, R. D. Dowell, P. Grisafi, D. K. Gifford, and G. R. Fink, Toggle involving cisinterfering noncoding RNAs controls variegated gene expression in yeast, Proceedings of the Na onal Academy of Sciences of the United States of America, 2009.

D. Bunina, M. ?tefl, F. Huber, A. Khmelinskii, M. Meurer et al., Upregula on of SPS100 gene expression by an an sense RNA via a switch of mRNA isoforms with different stabili es, Nucleic Acids Research, vol.45, issue.19, pp.11144-11158, 2017.

M. Catala, L. Aksouh, and S. A. Elela, RNA-dependent regula on of the cell wall Stress response, Nucleic Acids Research, vol.40, issue.15, pp.7507-7517, 2012.

R. M. Ceschin, Analysis of the regula on of the S. cerevisiae gene PIR3 by non-coding intergenic transcrip on, 2012.

O. Cohen-zontag, L. Q. Lim, D. Dahary, T. Olender, Y. Pilpel et al., Iden fica on of a secre on-enhancing cis regulatory targe ng element (SECReTE) involved in mRNA localiza on and protein synthesis, PLoS gene cs, vol.15, issue.7, p.1008248, 2019.

J. C. Cortés, M. Curto, V. S. Carvalho, P. Pérez, and J. C. Ribas, The fungal cell wall as a target for the development of new an fungal therapies, Biotechnology Advances, vol.37, issue.6, p.107352, 2019.

C. A. Davis and M. Ares, Accumula on of unstable promoter-associated transcripts upon loss of the nuclear exosome subunit Rrp6p in Saccharomyces cerevisiae, Proceedings of the Na onal Academy of Sciences, vol.103, pp.3262-3267, 2006.

E. L. Van-dijk, C. L. Chen, Y. Daubenton-carafa, S. Gourvennec, M. Kwapisz et al., XUTs are a class of Xrn1-sensi ve an sense regulatory non-coding RNA in yeast, Nature, vol.475, issue.7354, pp.114-119, 2011.

M. E. Donaldson and B. J. Saville, Natural an sense transcripts in fungi, Molecular Microbiology, vol.85, issue.3, pp.405-417, 2012.

M. Donzeau, J. P. Bourdineaud, and G. J. Lauquin, Regula on by low temperatures and anaerobiosis of a yeast gene specifying a puta ve GPI-anchored plasma membrane, Molecular Microbiology, vol.20, issue.2, pp.449-459, 1996.

M. Ecker, R. Deutzmann, L. Lehle, V. Mrsa, and W. Tanner, Pir proteins of Saccharomyces cerevisiae are a ached to ??-1,3-glucan by a new protein-carbohydrate linkage, Journal of Biological Chemistry, vol.281, issue.17, pp.11523-11529, 2006.

M. A. Ellison, A. R. Lederer, M. H. Warner, T. N. Mavrich, E. A. Raupach et al., The Paf1 Complex Broadly Impacts the Transcriptome of Saccharomyces cerevisiae, Gene cs, 2019.

A. H. Enyenihi and W. S. Saunders, Large-Scale Func onal Genomic Analysis of Sporula on and Meiosis in Saccharomyces cerevisiae, Gene cs, vol.163, issue.1, pp.47-54, 2003.

G. R. Fink, D. P. Rnai, and C. Link, RNAi in budding yeast, vol.326, pp.544-550, 2014.

H. Friesen, R. Lunz, S. Doyle, and J. Segall, Muta on of the SPS1-encoded protein kinase of Saccharomyces cerevisiae leads to defects in transcrip on and morphology during spore forma on, Genes and Development, vol.8, issue.18, pp.2162-2175, 1994.

I. Gagnon-arsenault, L. Parisé, J. Tremblay, and Y. Bourbonnais, Ac va on mechanism, func onal role and shedding of glycosylphospha dylinositol-anchored Yps1p at the Saccharomyces cerevisiae cell surface, Molecular Microbiology, vol.69, issue.4, pp.982-993, 2008.

M. V. Granovskaia, L. J. Jensen, M. E. Ritchie, J. Toedling, Y. Ning et al., High-resolu on transcrip on atlas of the mito c cell cycle in budding yeast, 2010.

A. Grbavac, I. ?anak, I. Stuparevi?, R. Tepari?, and V. Mr?a, Proteoly c processing of the Saccharomyces cerevisiae cell wall protein Scw4 regulates its ac vity and influences its covalent binding to glucan, Biochimica et Biophysica Acta -Molecular Cell Research, vol.1864, issue.3, pp.507-515, 2017.

P. Grisafi, A. Oudenaarden, . Van, and G. R. Fink, Single-cell analysis reveals that noncoding RNAs contribute to clonal heterogeneity by modula ng transcrip on factor recruitment, Molecular cell, vol.45, issue.4, pp.470-482, 2013.

P. W. De-groot, C. Ruiz, C. R. De-vázquez-aldana, E. Duenas, V. J. Cid et al., A genomic approach for the iden fica on and classifica on of genes involved in cell wall forma on and its regula on in Saccharomyces cerevisiae, Compara ve and Func onal Genomics, vol.2, issue.3, pp.124-142, 2001.

S. J. Hainer, J. A. Pruneski, R. D. Mitchell, R. M. Monteverde, and J. A. Martens, Intergenic transcrip on causes repression by direc ng nucleosome assembly, Genes and Development, vol.25, issue.1, pp.29-40, 2011.

A. Halme, S. Bumgarner, C. Styles, and G. R. Fink, Gene c and epigene c regula on of the FLO gene family generates cell-surface varia on in yeast, Cell, vol.116, issue.3, pp.405-415, 2004.

B. Ho, A. Baryshnikova, and G. W. Brown, Unifica on of Protein Abundance Datasets Yields a Quan ta ve Saccharomyces cerevisiae Proteome, Cell Systems, vol.6, issue.2, pp.192-205, 2018.

F. Huber, D. Bunina, I. Gupta, A. Khmelinskii, M. Meurer et al., Protein Abundance Control by Non-coding An sense Transcrip on, Cell Reports, vol.15, issue.12, pp.2625-2636, 2016.

R. Hurtado-guerrero, A. W. Schü-elkopf, I. Mouyna, A. F. Ibrahim, S. Shepherd et al., Molecular mechanisms of yeast cell wall glucan remodeling, Journal of Biological Chemistry, vol.284, issue.13, pp.8461-8469, 2009.
URL : https://hal.archives-ouvertes.fr/pasteur-01709962

U. S. Jung and D. E. Levin, Genome-wide analysis of gene expression regulated by the yeast cell wall integrity signalling pathway, Molecular Microbiology, vol.34, issue.5, pp.1049-1057, 1999.

H. Kitagaki, H. Shimoi, K. Itoh, and H. Shimoi, Iden fica on and analysis of a sta c culturespecific cell wall protein, Tir1p/Srp1p in Saccharomyces cerevisiae, European Journal of Biochemistry, vol.249, issue.1, pp.343-349, 1997.

F. M. Klis, P. Mol, K. Hellingwerf, and S. Brul, Dynamics of cell wall structure in Saccharomyces cerevisiae, FEMS Microbiology Reviews, 2002.

A. Lardenois, Y. Liu, T. Walther, F. Chalmel, B. Evrard et al., Execu on of the meio c noncoding RNA expression program and the onset of gametogenesis in yeast require the conserved exosome subunit Rrp6, Proceedings of the Na onal Academy of Sciences of the United States of America, vol.108, pp.1058-1063, 2011.

D. T. Law and J. Segall, The SPS100 gene of Saccharomyces cerevisiae is ac vated late in the sporula on process and contributes to spore wall matura on, Molecular and Cellular Biology, vol.8, issue.2, pp.912-922, 1988.

W. Lo and A. M. Dranginis, The Cell Surface Flocculin Flo11 Is Required for Pseudohyphae Forma on and Invasion by Saccharomyces cerevisiae, Molecular Biology of the Cell, vol.9, pp.161-171, 1998.

M. Lozancic, S. A. Hossain, V. Mrsa, and R. Teparic, Surface Display -An Alterna ve to Classic Enzyme Immobiliza on, p.9, 2019.

S. Lubliner, I. Regev, M. Lotan-pompan, S. Edelheit, A. Weinberger et al., Core promoter sequence in yeast is a major determinant of expression level, Genome Research, 2015.

M. Lussier, A. M. White, J. Sheraton, T. Di-paolo, J. Treadwell et al., Large scale iden fica on of genes involved in cell surface biosynthesis and architecture in Saccharomyces cerevisiae, Gene cs, vol.147, issue.2, pp.435-450, 1997.

D. Marguet and G. J. Lauquin, The yeast SRP gene: posi ve modula on by glucose of its transcrip onal expression. Biochemical and biophysical research communica ons, vol.138, pp.297-303, 1986.

V. Mr?a and W. Tanner, Role of NaOH-extractable cell wall proteins Ccw5p, Ccw6p, Ccw7p and Ccw8p (Members of the Pir protein family) in stability of the Saccharomyces cerevisiae cell wall, Yeast, vol.15, issue.10 A, pp.813-820, 1999.

A. Nevers, A. Doyen, C. Malabat, B. Néron, T. Kergrohen et al., An sense transcrip onal interference mediates condi on-specific gene repression in budding yeast, Nucleic Acids Research, 2018.

T. H. Nguyen, G. H. Fleet, and P. L. Rogers, Composi on of the cell walls of several yeast species. Oxida ve medicine and cellular longevity, p.4950591, 1998.

F. Winston, J. A. Martens, and P. J. Wu, Regula on of an intergenic transcript controls adjacent gene transcrip on in Saccharomyces cerevisiae, Genes and Development, vol.19, issue.22, pp.2695-2704, 2005.

F. Wyers, M. Rougemaille, G. Badis, J. C. Rousselle, M. E. Dufour et al., Cryp c Pol II transcripts are degraded by a nuclear quality control pathway involving a new poly(A) polymerase, Cell, vol.121, issue.5, pp.725-737, 2005.

B. Xie, E. Becker, I. Stuparevic, M. Wery, U. Szachnowski et al., The ancancer drug 5-fluorouracil affects cell cycle regulators and poten al regulatory long non-coding RNAs in yeast, RNA Biology, vol.16, issue.6, pp.727-741, 2019.

Z. Xu, W. Wei, J. Gagneur, F. Perocchi, S. Clauder-münster et al., Bidirec onal promoters generate pervasive transcrip on in yeast, Nature, vol.457, issue.7232, pp.1033-1040, 2009.