Local-scale biogeography and spatiotemporal variability in communities of mycorrhizal fungi, New Phytologist, vol.205, pp.1454-1463, 2015. ,
MuMIn: Multi-Model Inference, 2016. ,
Fitting Linear Mixed-Effects Models Using lme4, Journal of Statistical Software, vol.67, pp.1-48, 2015. ,
,
Plant spatial structure of plant communities determines arbuscular mycorrhizal fungal community assembly, Journal of Ecology, 2019. ,
URL : https://hal.archives-ouvertes.fr/hal-02328020
Experimental tests of the bacterial distance-decay relationship, ISME .J, vol.555, pp.1357-1365, 2010. ,
Fungal Sex: The Ascomycota. Pages 117-145 in: J, 2017. ,
,
A synthetic 560 community approach reveals plant genotypes affecting the phyllospere microbiota, PLoS Genetics, vol.10, p.1004283, 2014. ,
PCR primers that amplify fungal rRNA genes from environmental samples, Applied and Environmental Microbiology, vol.66, pp.4356-460, 2000. ,
,
Revealing structure and assembly cues for Arabidopsis root-inhabiting bacterial microbiota, Nature, vol.488, pp.91-95, 2012. ,
The roots and mycorrihzas of herbaceous woodland plants, New Phytologist, vol.114, pp.457-468, 1990. ,
A comparison-shopper's guide to connectivity 570 metrics, Front Ecol Environ, vol.2, pp.529-536, 2004. ,
Spatial variability of arbuscular mycorrhizal fungal spores in two natural plant communities, Plant and Soil, vol.251, pp.227-236, 2003. ,
Arbuscular mcorrhizal fungal 575 propagules in a salt marsh, Mycorrhiza, vol.14, pp.165-170, 2004. ,
Towards a really unified theory for metacommunities, Functional Ecology, vol.19, pp.182-186, 2005. ,
Diversity of fungal symbionts in arbuscular mycorrhizas from a natural community, New Phytologist, vol.130, pp.259-580, 1995. ,
Plant compartment and biogeography affect microbiome composition in cultivated and native Agave species, New Phytologist, vol.209, pp.798-811, 2016. ,
Comparative inoculum potential of spores of six vesicular-arbuscular mycorrhizal fungi, New Phytologist, vol.89, pp.385-391, 1981. ,
Hierarchical assembly rules in arbuscular mycorrhizal (AM) fungal communities, Soil Biology and Biochemistry, vol.97, pp.63-70, 2016. ,
Flore et végétation du massif armoricain. I-Flore vasculaire, 1971. ,
Sustainable agriculture: possible trajectories from mutualistic symbiosis and plant neodomestication, Trends in Plant Science, vol.18, pp.597-600, 2013. ,
URL : https://hal.archives-ouvertes.fr/hal-00932183
, , p.595
Structure, variation, and assembly of the root-associated microbiomes of rice, Proceedings of the National Academy of Sciences USA, vol.112, pp.911-920, 2015. ,
FROGS: Find, Rapidly, OTUS with 600 Galaxy Solution, Bioinformatics, vol.34, pp.1287-1294, 2017. ,
Quantifying connectivity: Balancing metric performance with data requirements, Connectivity Conservation. Pages 297-317 in K. Crooks, and M, 2006. ,
Divergent 605 perspectives on landscape connectivity reveal consistent effects from genes to community, Current landscape ecology reports, vol.1, pp.67-79, 2016. ,
An {R} Companion to Applied Regression, Second Edition, 2011. ,
Diversity of arbuscular mycorrhizal fungi 610 colonizing roots of the grass species Agrosystem cappilaris and Lolium perenne in a field experiment, Mycorrhiza, vol.14, pp.111-117, 2004. ,
Connectivity, Habitat continuity, and metapopulations in dynamic landscapes, Oikos, vol.87, pp.209-219, 1999. ,
Beyond 615 biogepgraphic patterns: processes shaping the microbial landscape, Nat. Rev. Microbiol, vol.10, pp.497-506, 2012. ,
Taxonomic basis for variation in the colonization strategy of arbuscular mycorrhizal fungi, New Phytologist, vol.153, pp.335-344, 2002. ,
The distribution and phenology or 620 arbuscular mycorrhizae along an inland salinity gradient, Canadian Journal of Botany, vol.73, pp.1318-1327, 1995. ,
,
Reciprocal rewards stabilize cooperation 625 in the mycorrhizal symbiosis, Science, vol.333, pp.880-882, 2011. ,
TaqMan Real-Time PCR assays to assess arbuscular mycorrhizal responses to field manipulation of grassland biodiversity: effects of soil characteristics, plant species richness, and functional traits, Applied and Environmental Microbiology, vol.76, pp.3765-3775, 2010. ,
Ecophylogeney of the endospheric root fungal microbiome of cooccurring Agrostis stolonifera, Peer Journal, vol.5, p.3454, 2017. ,
What drives differences in arbuscular mycorrhizal fungal communities among plant species?, Fungal Ecology, vol.24, pp.135-138, 2016. ,
The metacommunity concept: a framework for multi-scale community ecology, Ecology Letters, vol.7, pp.601-613, 2004. ,
The interactions between plant life form and fungal traits of arbuscular mycorrhizal fungi determine the symbiotic community, Oecologia, vol.640, pp.1075-1086, 2014. ,
Population dynamics and local specialization in a clonal perennial (Ranunculus repens): I. The dynamics of ramets in contrasting habitats, Journal of Ecology, vol.69, pp.743-755, 1981. ,
, , p.645
, Arabidopsis thaliana root microbiome, Nature, vol.488, pp.86-90
SWARM: robust and fast clustering method for amplicon-based studies, Peer Journal, vol.2, p.593, 2014. ,
Arbuscular mycorrhizal fungi host preference and site effects in two plant species in a semiarid environment, Applied Soil Ecology, vol.48, pp.313-650, 2011. ,
The Theory of Island Biogeography, 1967. ,
Survival of propagules of arbuscular mycorrhizal fungi in soils in eastern Australia used to grow cotton, New phytologist, vol.655, pp.773-780, 1997. ,
phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data, PLoS ONE, vol.8, p.61217, 2013. ,
Circuit theory predicts gene flow in plant and animal poulations, Proceedings of the National Academy of Sciences USA, vol.104, pp.19885-19890, 2007. ,
Using circuit theory to model connectivity in ecology, evolution, and conservation, Ecology, vol.89, pp.2712-2724, 2008. ,
Effect of floristic composition and configuration on plant roots mycobiota: a landscape transposition on a small scale, 2019. ,
A general and simple method for obtaining R² from generalized linear mixed-effects models, Methods in Ecology and Evolution, vol.4, pp.133-142, 2013. ,
Garbelotto Accepted Article 2007. A strong species-area relationship for eukaryotic soil microbes: island size matters for ectomycorrhizal fungi, Ecology Letters, vol.10, pp.470-480, 2018. ,
Evidence of dispersal limitation in soil microorganisms: isolation reduces species richness on mycorrhizal tree islands, Ecology, vol.675, pp.3631-3640, 2010. ,
, , 2018.
The SILVA ribosomal RNA gene database project: improved data processing 680 and web-based tools, Nucleic Acids Research, vol.41, pp.590-596, 2013. ,
Ecological responses to habitat edges: Mechanisms, models and variability explained, Annual Review in Ecology Evolution and Systematics, vol.35, pp.491-522, 2004. ,
Van der Heijden 2004. Nonlegumes, 685 legumes and root nodules harbor different arbuscular mycorrhizal fungal communities, Applied and Environmental Microbiology, vol.70, pp.6240-6246 ,
Relative Importance of Deterministic and stochastic processes in driving arbuscular mycorrhizal fungal assemblage during the spreading of a toxic plant, PLoS ONE, vol.9, p.95672, 2014. ,
, , 2008.
Can dispersal mode predict corridor effects on plant parasites ?, Ecology, vol.92, pp.1559-1564, 2011. ,
Connectivity is a vital element of 695 landscape structure, Oikos, vol.68, pp.571-573, 1993. ,
Landscape connectivity: a return to the basics, Connectivity Conservation: maintaining connections for nature, pp.29-43, 2006. ,
Influence of spatial structure on pathogen 700 colonization and extinction: a test using an experimental metapopulation, Plant Pathology, vol.52, pp.350-361, 2003. ,
On the usage and measurement of landscape connectivity, Oikos, vol.90, pp.7-19, 2000. ,
,
Mycorrhizal fungal diversity determines plant biodiversity, ecosystem variability and productivity, Nature, vol.396, pp.69-72, 1998. ,
Arbuscular mycorrhizal community composition associated with two plant species in a grassland ecosystem, Molecular Ecology, vol.11, pp.1555-1564, 2002. ,
A microorganims' journey between plant generations, vol.6, p.79, 2018. ,
Independent spread of vesicular-arbuscular fungi in soil, Transactions of the British Mycological Society, vol.74, pp.407-410, 1980. ,
Complex interactions in metacommunities, with implications for biodiversity and higher levels of selection, Ecology, vol.73, 1984. ,
Selectivity by host plants affects the distribution of arbuscular mycorrhizal fungi: evidence from ITS rDNA sequence metadata, BMC Evolutionary Biology, vol.12, pp.50-62, 2012. ,
,