J. R. Carapetis, A. C. Steer, E. K. Mulholland, and M. Weber, The global burden of group A streptococcal diseases, Lancet Infect Dis, vol.5, pp.685-694, 2005.

B. Beall, R. Facklam, and T. Thompson, Sequencing emm-specific PCR products for routine and accurate typing of group A streptococci, J Clin Microbiol, vol.34, pp.953-958, 1996.

S. Y. Tartof, J. N. Reis, A. N. Andrade, R. T. Ramos, M. G. Reis et al., Factors associated with group A Streptococcus emm type diversification in a large urban setting in Brazil: a cross-sectional study, BMC Infect Dis, vol.10, p.327, 2010.

C. E. Turner, J. Abbott, T. Lamagni, M. T. Holden, S. David et al., Emergence of a new highly successful acapsular group A Streptococcus clade of genotype emm89 in the United Kingdom, vol.6, p.622, 2015.

L. Zhu, R. J. Olsen, W. Nasser, I. De-la-riva-morales, and J. M. Musser, Trading capsule for increased cytotoxin production: contribution to virulence of a newly emerged clade of emm89 Streptococcus pyogenes, vol.6, pp.1378-1393, 2015.

N. Soriano, P. Vincent, S. Moullec, A. Meygret, V. Lagente et al., Closed genome sequence of noninvasive Streptococcus pyogenes M/emm3 strain STAB902, Genome Announc, vol.2, pp.792-806, 2014.
URL : https://hal.archives-ouvertes.fr/inserm-01060480

S. Andrews, FastQC: a quality control tool for high throughput sequence data, 2010.

S. B. Beres, R. J. Olsen, O. Saavedra, M. Ure, R. Reynolds et al., Genome sequence analysis of emm89 Streptococcus pyogenes strains causing infections in Scotland, J Med Microbiol, vol.66, pp.1765-1773, 2017.

R. K. Aziz, D. Bartels, A. A. Best, M. Dejongh, T. Disz et al., The RAST server: Rapid Annotations using Subsystems Technology, BMC Genomics, vol.9, p.75, 2008.

Y. Zhou, Y. Liang, K. H. Lynch, J. J. Dennis, and D. S. Wishart, PHAST: a fast phage search tool, Nucleic Acids Res, vol.39, pp.347-352, 2011.

C. Plainvert, M. Longo, E. Seringe, B. Saintpierre, E. Sauvage et al., A clone of the emergent Streptococcus pyogenes emm89 clade responsible for a large outbreak in a postsurgery oncology unit in France, Med Microbiol Immunol, vol.207, pp.287-296, 2018.
URL : https://hal.archives-ouvertes.fr/inserm-01955462